rs27124919 SNP Detail

Summary

• ID
  rs27124919
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43628605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTTTTT TACTACAGGC
  CTTGGGAAAG GTTGACAGTT TCTCGCTAAG AGTGCATTTT TACACTGGAC TCACACCTAC
  TAGTGCTGGG GTTGGGGACG ACGGCTGAGC ACTGATTCGT GGTGGCCACT TCTCATCTGC
  TTCTGGAAAA GGACAGAGAG GTTTCCCTGC CTTGAAAGCT GTTTAACATT GGAGTCTACC
  R
  TTGGGTTTCA ATATGAGACC AGTGATTGTA ATTTTAGCGC CTCAGCAAGA ACTCATTTTC
  AGTTTCTCTT CAACTTTTGC TCTGCCTCAA GATCAGAAGC TTTCCTGGTT TTGTCTATTT
  TAAGTTCCTC TTTTGTTGCA GTTGTAGACA CTCTATGGTC CGGATTCAAG GCAGCAATGG
  CTTCTACCTC ATGGCTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss37376645	NES08729547	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs27124919					SNP	A	A	A	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37376645	NES08729547	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43628605 () rs orientation: forward

Symbol	Name	Function Class
Rr556296	regulatory region 556296	372 bp distal
Rr556297	regulatory region 556297	within coordinates
Tssr17595	transcription start site region 17595	931 bp upstream
Tssr23873	transcription start site region 23873	82 bp downstream
Tssr23874	transcription start site region 23874	423 bp downstream