rs27124920 SNP Detail

Summary

• ID
  rs27124920
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43628550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAGAGTGC ATTTTTACAC TGGACTCACA CCTACTAGTG
  CTGGGGTTGG GGACGACGGC TGAGCACTGA TTCGTGGTGG CCACTTCTCA TCTGCTTCTG
  R
  AAAAGGACAG AGAGGTTTCC CTGCCTTGAA AGCTGTTTAA CATTGGAGTC TACCATTGGG
  TTTCAATATG AGACCAGTGA TTGTAATTTT AGCGCCTCAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37376646	NES08729546	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27124920					SNP	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37376646	NES08729546	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43628550 () rs orientation: forward

Symbol	Name	Function Class
Rr556296	regulatory region 556296	317 bp distal
Rr556297	regulatory region 556297	within coordinates
Tssr17595	transcription start site region 17595	986 bp upstream
Tssr23873	transcription start site region 23873	137 bp downstream
Tssr23874	transcription start site region 23874	478 bp downstream