rs27127997 SNP Detail

Summary

• ID
  rs27127997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19089545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGGCTTC AGACACCTAG ACTTGCCATT TACTGTTTTC
  TCCAATGGAA AGGCAGGAGG TGAGAGAGTA TGGAGTAAGT TCTTGGAAAA GAGCTAGGTG
  R
  TAAATTGCCT AAAGCTGATG AACTAACATT TTGAGAAAGC AAAGAAGTCA ATGTTTCTTT
  TAAAGTTTTT TAAAACAAGT TTTTCATTAC AAAATTGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37365416	NES08794901	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	A		G		A	G	G	A	G
ss45330251	mCV24556510	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss146313254	ENSMUSSNP7161094	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27127997					SNP	A	A	G	G	A	A	A	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37365416	NES08794901	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19089545 () rs orientation: forward

Symbol	Name	Function Class
Rr552430	regulatory region 552430	556 bp distal
Rr552431	regulatory region 552431	183 bp distal