rs27128004 SNP Detail

Summary

• ID
  rs27128004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19087466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTCTCC TTGTAACTGA
  AAAGCACACC AGGGCACACT CTTTGAGGCA CAAGCAAACA TCTGCTCCTC CTCTTCCTCA
  TCTCTTTTCC TACTTATTAC TTATAGATAA TTCTTGCCCA TTGGATCTCA GCCATGGTCA
  GTGACAGTTA TCAGAGCCTG TGCGGCTCTC TCCTCATTTA CCACTGCACA CTTGGAAGTT
  R
  CTTTGAAAGG AAGCCCTTTC CTTTTCCATA GTTACACATA TTTATTGGTA CAAACTCATG
  AGAAAAAAAC CTGTTTTCCA AAGATTGATA ATTGATAATT TACTATTATA CTGAAGTATT
  TAAGTGCCCA AATTTAATGA AGCCCCTACT CACTGGCTTC CCTTTTCTCA TGGCGGGGAG
  GTGAATCCCC CCACCAACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37365423	NES08794995	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27128004					SNP	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37365423	NES08794995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19087466 () rs orientation: forward

Symbol	Name	Function Class
Rr552430	regulatory region 552430	1241 bp proximal
Rr552431	regulatory region 552431	1875 bp proximal