About   Help   FAQ
rs27128143 SNP Detail
Summary
  • ID
    rs27128143
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:19056111 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGTGGGGTC TGTGAGCATG
    TTTCTGTATG TGTTATTTCT ATAAATGGAG TCCTACAATT GCACTGCAGA GGTTTGTTTA
    AGACCCCTCA AAGCACATTT GGTAGACTGA TTCGTTACCA TGGGCCACCT TACCGCTTAC
    ATTTGCATAT GACACATAGT GGGAGAAGAG TTGGAAACAA GGACACTGAC ATGGACCAGA
    Y
    GAGTCTCTGG CGCCAAGCAT CTCATGTTAT CCACCAAAAA ATTACACAGA TTAGATGATG
    GTATCGCGTT TTACAGAAGA ACAAGTCGTT CAAGCTCTCA CAGAGAAAGT GTGCCAGCTT
    ATGGTGGCAG AACACTGAAC GTTTGCATGT CGTCATTTGA GAAAGTCCAA ACACATTCAT
    TTCATCACCC AGATTTTAAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37365563 NES08783469 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T C T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27128143 SNP T T T T T T C T T T C T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37365563 NES08783469 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:19056111 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm75706 predicted gene, 75706 within coordinates
Tssr16405 transcription start site region 16405 1222 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory