rs27128151 SNP Detail

Summary

• ID
  rs27128151
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19054825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGCTCC ATCTAAAAGA
  ACCTGATCTA AGGTCAAACT CGAGTTAACT AACAAGCCTG TACCTAACTC TAGTCTCTAG
  GTCACTCCCT AACAACCACC AATCAAGAGA AAAGCAGAAG TTAGGTTTAT GGTTTGGCCC
  CTAGCACTAG CCACTCATTT TAAAGGGCAA TGATAGCCTT CCAATCAAAT GTGTGCCAAG
  Y
  TGAAAACTCC TTTGCTTATG TGGTTGCCTC TATAGCTTCC TTGTAACTGG GCTCGGGGCT
  TCACTCTCCT GCCCTGCTGC ATCGGGGTCG GCAGAGAGTC CAAGTTTGAG CTTGCGTAAA
  AACGAGCCTA GTGCGATCAC ATTGGAACCG GCGCCTTGGT GGTCTTTTGG GGTTCTTGAT
  CCTGAGCAGG CACAACAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37365571	NES08783461	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27128151					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37365571	NES08783461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19054825 () rs orientation: forward

Symbol	Name	Function Class
Gm75706	predicted gene, 75706	240 bp upstream
Rr63907	regulatory region 63907	1453 bp distal
Tssr16405	transcription start site region 16405	34 bp upstream
Tssr22816	transcription start site region 22816	1633 bp upstream