rs27128153 SNP Detail

Summary

• ID
  rs27128153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19054240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCTTTGAG TCTCCATGTC CTGATCTATG CACTGAGAAA
  GAGGCACTAC CTCATGGGGC AGATAATGTA AGCAGAAGTG TGCAAAGCAT CTCCCTGCTG
  Y
  ACTTCATGCC ACCAAAGAGA CACTCAATAC ATATGACTTC TCTTCTTGTA TGTAGCTATC
  AGACTTAGTC AAACTGTATT AGATGCAGAG TTCACGGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37365573	NES08783459	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T	T		T	C	T	T	T	C	T	T	T
ss45266552	mCV25213405	ABI	CRAMUS_MOUSE	f	SNP		C					T
ss146312971	ENSMUSSNP4835523	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27128153					SNP	T	C	C	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37365573	NES08783459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19054240 () rs orientation: forward

Symbol	Name	Function Class
Gm75706	predicted gene, 75706	825 bp upstream
Rr63907	regulatory region 63907	868 bp distal
Tssr16405	transcription start site region 16405	619 bp upstream
Tssr22816	transcription start site region 22816	1048 bp upstream