rs27128154 SNP Detail

Summary

• ID
  rs27128154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19053993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTT
  TAGCTCTCTG TAGGTTTGTG TGAATATTCA ACTTCTTAGC TGTTGTCAGC ATCTCAACAC
  TAAGAGCCAC ATGGAGATGA AGAGCACTGG ATCCAGATGT TTGATGTGTG GTTAAAGCTA
  TCTCACCCAA GTTCCTAACT GCTGTGTCTA TGTCGTTTGG AGACATTTCT TCACTGGTCC
  Y
  CATTAATTTA TGGCTTAAAA GTCTTCAATG GACAGGATCA TCCCACAGTC CTTTCTCTGC
  CTTTGATCAA CTGGGAAGCC ACAGAGAGCC CAGATCCTTG CTGCTACAGC AAACCAAGTT
  CTGCTGTAGG AACACTGACT CCACAATTCC TTTGAGTCTC CATGTCCTGA TCTATGCACT
  GAGAAAGAGG CACTACCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37365574	NES08783458	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27128154					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37365574	NES08783458	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19053993 () rs orientation: forward

Symbol	Name	Function Class
Gm75706	predicted gene, 75706	1072 bp upstream
Tssr16405	transcription start site region 16405	866 bp upstream
Tssr22816	transcription start site region 22816	801 bp upstream