rs27128159 SNP Detail

Summary

• ID
  rs27128159
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19053198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCCAGTG TCCTAAAATG
  CCCTGTCTAT GCCCCACCCC CTGTCTAACC TCAGACTGTG CTTGATCCCT GCTTAGCGGG
  CTGAAGAACC TCACCTTATC CACAGGCAGC CCCTTCCATA CAGAAGAAAC CCTTTACATT
  CTCCCAGTAG CTATCTTGAG TAGCTACTGC TTCACTTCTC TACTGGGCTT TTCTCAGAGC
  W
  TCTCATTTTG TAGGGAAAGA CAGTTGCTGG TGGGTAGTGA GGTTCCTGTT CTGCTTACAA
  CCTCCTTCCC CTTTAATAGA GGTTGACTTG ATGACTGAAG GTTGTGGTTC TCTCAGGCTT
  TGAGTCTCAT AACTGTCCAG TCTCATCTGA CCCCAAATTA CACACAATAA TTAAGATATA
  TTTCATCTGA TGGGTAAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37365579	NES08783551	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27128159					SNP	A	A	A	A	A	A	T	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37365579	NES08783551	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19053198 () rs orientation: forward

Symbol	Name	Function Class
Gm75706	predicted gene, 75706	1867 bp upstream
Rr63907	regulatory region 63907	within coordinates
Tssr16405	transcription start site region 16405	1661 bp upstream
Tssr22816	transcription start site region 22816	6 bp upstream