rs27129032 SNP Detail

Summary

• ID
  rs27129032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:36529050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCAATG CCACATTAAC
  TAAATTATTA TTTTTTAATA GATTGAGATG GCTGATATGT AGACACTTTA AAAATAGTTT
  TGACTTATTT CGGAAATACT CATACATTAA CTCTAGTTAA AACTTGGAAA GACTAAATGC
  CAGTCAGAGA GACAAACTTG TCACTAAACA AGTCTTCAAA TGAAATAAAG CCACAGAGCT
  Y
  TTTCAGCTGC TAGGAGATCA ACTCTAGTTT GATCATGTTC CTTTTTCTAT TGTTTAGTGA
  TTACCCACTT GGTTAGGACA TGATTGAAGG AAAAACAAAA AAGACAAATA CCACTTAAAC
  TAGAAAGAAA ATGTTGGAAA CATAAAAAGT AAACAGTCTT TGGCTTAAAA ACCCAGTTTA
  AGAATAAAAC CTGTGACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37389553	NES08747453	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27129032					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37389553	NES08747453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:36529050 () rs orientation: forward

Symbol	Name	Function Class
Or1j16	olfactory receptor family 1 subfamily J member 16	1003 bp upstream