rs27130656 SNP Detail

Summary

• ID
  rs27130656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:12486988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTGTTA GAATACTTTT
  ACATTAAAGT TAATGTTAAT ATTTTAACCC TGACTTCTAG TGTTGCCTTT TAAAATCAGA
  ACTAGTCCTC ATCTATGATT CCACAATTAG ATGATATTAA CTTTGAATAA GGGTGATGAG
  TGTAGAGAAA CCTGTGTGAT TATTCAGCTA TTTGTAAATC TCCCATCCAA CTACTTATTC
  R
  TGCATACACC GATCATCTAC CAATCTTTCT ATTTTCCTCT GTCTCTTCAA GCGTCCACCC
  AGGCATCCTT CCTGTATTAG TGAGGGATTT TTATTGCTGC TGTGAAACAC CAGGACCAAA
  AAGCAAGTTG GGGAGGAAAG GGTTGAGTTG GCTCCCATTT CCAGATCACA GTCCATCATT
  GGAGGAAAGA CAGGACAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37333978	NES08814601	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27130656					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37333978	NES08814601	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12486988 () rs orientation: forward

Symbol	Name	Function Class
Rr551920	regulatory region 551920	1225 bp distal