rs27130658 SNP Detail

Summary

• ID
  rs27130658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:12486492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACATGAT AGAAGTGACG
  CTGGGTGGAG AGTGGTAATC GGTAGACTAG TTCAGTACTG AACAATATTG AACACTGTAA
  CAATAACCCC TAATAAATCA TCTTGAAAGC TACATTGCCT ATATTTTTTT CCAAGGTCAA
  ATAAAGTATT CCCATAAGTA TCCAAAGGTT GAGTGCATTT TTATGGTTTA TTTTTAGAGG
  Y
  TATTGACTGT GTCTTCTAGA GAAAACTTTA AATTCCTTTA ATATATAAAA AAAATCATCA
  AAATACTTGA AACCTGCCTT ATTATGTTTA AGTACATTGT GAACTGAGGT ATAAATTAAT
  TCAGGGATTT ATTAATATAT AAATAGGATG TGAATCCTAT CTAAATAAAC ACAATTCTAT
  ATGTTGAAAT TATTTGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37333980	NES08814599	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27130658					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37333980	NES08814599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12486492 () rs orientation: forward

Symbol	Name	Function Class
Rr551920	regulatory region 551920	729 bp distal