rs27130660 SNP Detail

Summary

• ID
  rs27130660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:12484273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTAATAG AAAGTTTGCT
  GACCCTAAGT GTTGGGGATG CAGCCTCAGT TTCAAAGAGC TAGCCTAGTG TGTGCATGGT
  CCTGGGTTTG ATGGTGTGTG ATGGAGCAGA GGAAGAAGCC TGCTGGTGCC CTGGTTGTGA
  CTATGAGGTG TAGGATCTCA AGGAGCATGT TCTGATTTCA CAGGTTGATC TTGTGAAACC
  R
  TGTGCCTTAG GAGCAGAAAT GTGTGTATGT TTCACGATGC CTAGGCACAC AGGTGAGCAT
  TGGGTAAGCA TTGCAGCACT AGGTGTATAC AATGGATATA TGAATGTACT CAGAAACTAT
  TATGTGGGTC CCTTGCCTGT ACCCTTCACA TCGTATTGCA GATGTGACCT TACCTTTCTA
  TGTACCTGCA GTTTAGATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37333982	NES08814618	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27130660					SNP	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37333982	NES08814618	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12484273 () rs orientation: forward

Symbol	Name	Function Class
Rr551920	regulatory region 551920	1469 bp proximal