rs27130763 SNP Detail

Summary

• ID
  rs27130763
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11557203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGGGAG AGAGAGGTTG
  GGGAGGGGAG GGGGAGGGAC AGGGAGACTA GGAGATCAAT GGATCAAAGA CTCTTCACCA
  TGTAGTTAAT GAGGTGAGAC ACCCTCAAGA AAGACAGTCC AGGGAGAAAG TGGCCACAGT
  ATGCGTGGGT CAACAGAGAC CCTGAGGACA GTGGCTGTGG GCTTACCCAT CACCAGCTGA
  S
  AGAAGTTAAC AGCCTTGCTC AGCCCTGCTC TATGACCGAT GCCCTCCCCC CACCCCCTAT
  TTCCATATCT CCAGCATTGG AGTGTCAGCC AGTCCTCTTC ACAGCCCAGA GCTGGGACTA
  GTACCTTAGC ACTCCGTGCT AGTGAGGGGC AAAGGCCACT CTAGCCTCCC AGCAACCACA
  GAAATAACCT GCCCATTCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37336791	NES08814073	PERLEGEN	MM_PANEL2	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs27130763					SNP	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336791	NES08814073	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11557203 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11203	CpG island 11203	818 bp proximal
Pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	within coordinates
Rr396770	regulatory region 396770	1504 bp upstream
Rr551813	regulatory region 551813	within coordinates
Rr551814	regulatory region 551814	1675 bp proximal
Tssr16127	transcription start site region 16127	1631 bp upstream
Tssr22641	transcription start site region 22641	1501 bp downstream