rs27130764 SNP Detail

Summary

• ID
  rs27130764
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11556887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGTGAG TTTGCCAGCC
  TGGTCTACAT ATTGAGTCCC AGGACAGCCA GGACTATAGG AGACTCACTC CCCACCCCCT
  CCCCCACCCC CGAAAAAAAA AACCTAATTG AACAGCCTAA TTATTTCAGA CCTTAATTAG
  TAAGGTAATC CCCTAAACAC TGGGATGACT GACAGACATC TTTGCCTTCC TTCAATTTGC
  Y
  CACCAGAGAC TGCAAGGTCA TAAATAGGAG AGGGAGAAGA AGGGGGAGAG GAAGAGGGAA
  GGAAGGAGGA AAGGGAGAGG AGGGAGGGGA GGGAGAAGTA GGTAGAGGGG GAAAGGGAGG
  GGGAGAGAGA GGTTGGGGAG GGGAGGGGGA GGGACAGGGA GACTAGGAGA TCAATGGATC
  AAAGACTCTT CACCATGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37336792	NES08814090	PERLEGEN	MM_PANEL2	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs27130764					SNP	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336792	NES08814090	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11556887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11203	CpG island 11203	1134 bp proximal
Pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	within coordinates
Rr396770	regulatory region 396770	1820 bp upstream
Tssr16127	transcription start site region 16127	1947 bp upstream
Tssr22641	transcription start site region 22641	1817 bp downstream