rs27130945 SNP Detail

Summary

• ID
  rs27130945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:11502949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCAGCAA CAGAAGGCAA
  CACACGCCAC ATGGTTGTTC AGTAGATGAA AGCATCATTG GATCCACCTG CAGCATCCTC
  CCAGTCTGAT GGGATAATAT AACAAGAGCT TGCCTCTGTA GAGTAGGCTT GGGATGTGTG
  GCACAGGGAG AATAGAGATA ACAGATATAT CTTTTAAAGA CCCTCTCCTT CATGGTTACA
  R
  TGTACATGGA CTGCTTACCA TGTACCTTTT GTCTCCTAAT ATCTAATTAA TTTGATACCC
  AATGAATGGC CTTGAACTTT AGGACCTCAT ATCTCTGCCA CACACTGTGA CAGGGTATCT
  TATTGATAAC TGTGGGAGGC AGTGCTCAAC ATGCAACTCA GTGAGTCCAG GACAGAGTTT
  AAAGCCAGGC CTCACCACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ
ss37336974	NES08815400	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ
rs27130945					SNP	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336974	NES08815400	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11502949 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr551794	regulatory region 551794			1043 bp distal
Tssr22628	transcription start site region 22628			242 bp downstream
Tssr22629	transcription start site region 22629			263 bp downstream
Tssr22630	transcription start site region 22630			305 bp downstream
Tssr22631	transcription start site region 22631			1423 bp downstream
Tssr22632	transcription start site region 22632			1775 bp downstream