rs27130946 SNP Detail

Summary

• ID
  rs27130946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:11502850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGCGAAA CAAGACCTAC
  CTTGACCTTA TAGGTATACT ACCACATGAA GATCTCTCGG AAAATGGGCT TAACCTGCCA
  GGCCCTCAGA ACACAATGAA TACCAGCAAC AGAAGGCAAC ACACGCCACA TGGTTGTTCA
  GTAGATGAAA GCATCATTGG ATCCACCTGC AGCATCCTCC CAGTCTGATG GGATAATATA
  R
  CAAGAGCTTG CCTCTGTAGA GTAGGCTTGG GATGTGTGGC ACAGGGAGAA TAGAGATAAC
  AGATATATCT TTTAAAGACC CTCTCCTTCA TGGTTACAAT GTACATGGAC TGCTTACCAT
  GTACCTTTTG TCTCCTAATA TCTAATTAAT TTGATACCCA ATGAATGGCC TTGAACTTTA
  GGACCTCATA TCTCTGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	MOLF/EiJ	NZW/LacJ
ss37336975	NES08815399	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	MOLF/EiJ	NZW/LacJ
rs27130946					SNP	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336975	NES08815399	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11502850 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr551794	regulatory region 551794			944 bp distal
Tssr22628	transcription start site region 22628			341 bp downstream
Tssr22629	transcription start site region 22629			362 bp downstream
Tssr22630	transcription start site region 22630			404 bp downstream
Tssr22631	transcription start site region 22631			1522 bp downstream
Tssr22632	transcription start site region 22632			1874 bp downstream