rs27130949 SNP Detail

Summary

• ID
  rs27130949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:11502102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGATGACA GGTGGACACA
  CTTGAGGTCA GCATTATTGA TGAGTACCAC TGAACTCAGA CCTGCTGCTT ACTCACATAC
  TAGTCCTACT GTCGTTAGTT CTTAATGCAA TCTTGCTGCA TGTGCCAGCA TCCTGTAGGT
  AATTATACAG AAAGGAAACC CGACCAGCTG GTGAACTACA GGATAGCATG GCTGAAGAGC
  R
  AATTATGGGA AGAGAAAGCC TGACGCATGA TTAAACCCCC AACTTCAACA GTACTCGTCT
  ACCATAGCAC TGTTGCGAGA CAAACACGCT CCTGGGTCCT AACTTCAACT CTTCTTCCTC
  CATTAAGTGA TTAATATCTT CAACAACATG TGGCCAAGTG CAGGTGTGGA TACAGCTGAC
  TTAAACATCC CACCACCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37336978	NES08815416	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27130949					SNP	A	A	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336978	NES08815416	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11502102 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3			Intron
				Noncoding-Transcript-Variant
Rr551793	regulatory region 551793			1681 bp distal
Rr551794	regulatory region 551794			196 bp distal
Tssr22628	transcription start site region 22628			1089 bp downstream
Tssr22629	transcription start site region 22629			1110 bp downstream
Tssr22630	transcription start site region 22630			1152 bp downstream