rs27130951 SNP Detail

Summary

• ID
  rs27130951
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:11501775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGTCGGC TACCTAACAC
  TCCTGTTACT ACTGCTTTCC AGCCACAACA ACTCCAACCC TCAAACTAGT CAAAATAAAC
  ACTTCCTCCC AGAAGTTGGT TTTGTCTCAG CAATGAGAAA AATAGCCAAT CTAAGTGGAA
  AGAAGTCATT GTCTTAAGAC CTCCACGCCC TTGGGAGATT CAGAATGAAA GTCCTGCCCA
  W
  AGCATGGTTC CCTAAGTAAG AGCCACAGAA AGCCACCAGG TCCGGAGAGC TGAGCCAGCA
  CCTACAATGT CATCAGGCTT ATATGCTCAC ATACTCATGA GCCCAGTGCT CTGGATGCCA
  GATGGAAAGG ATGACAGGTG GACACACTTG AGGTCAGCAT TATTGATGAG TACCACTGAA
  CTCAGACCTG CTGCTTACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss37336980	NES08815414	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs27130951					SNP	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336980	NES08815414	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11501775 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3			Intron
				Noncoding-Transcript-Variant
Rr551793	regulatory region 551793			1354 bp distal
Rr551794	regulatory region 551794			within coordinates
Tssr22628	transcription start site region 22628			1416 bp downstream
Tssr22629	transcription start site region 22629			1437 bp downstream
Tssr22630	transcription start site region 22630			1479 bp downstream