rs27130952 SNP Detail

Summary

• ID
  rs27130952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:11500793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAATACTG TGGACTCAGC
  AGAGTTCTGC TAGATGTCAA TGAAATAAAC CTAGATCACT CCCTTAGTTG ACAAAGCAAA
  AGCCATTCAT CCTTACCACA TGCTCAAAGC TGAGGAGCTC AGAGCAGCTG CCAAACGAAG
  CGTAGCTTTC CCTCACCCGG ACATCCCAGC ACGGTAAGAT GAACGAATCT GTCCAGATAA
  R
  TCTAGTATCG CTACCACAGA CCGTTTTCAA ACTCACAACC CAGCTCCAGG GTCTCCCTGG
  CCTCATCACC TATTGCAACC TGCCCTCGGG TTCTCTTCTT CATACACAGT TTTACCACTG
  AGAAAGAGTC ATCAACCATG ACCCCTCATC CTGCATCTCA CAACTTCCCT GGATCCAGTC
  CCTAACTCTG CTATTTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37336981	NES08815453	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27130952					SNP	A	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336981	NES08815453	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11500793 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3			Intron
				Noncoding-Transcript-Variant
Rr551793	regulatory region 551793			372 bp distal
Rr551794	regulatory region 551794			580 bp proximal
Tssr22627	transcription start site region 22627			1962 bp upstream