rs27130953 SNP Detail

Summary

• ID
  rs27130953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:11500663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTCTGT TGGAACTGAG
  TCAGGGACTC AGAGGTACAA GTTGACTGAG TTATCAGGTC AGGGATTATG TCGATCTACT
  AATCGTAGGA ATAAATCCCG CTGGCAGTAG ACACTTTGGA AGGGGGAAAA GACAATACTG
  TGGACTCAGC AGAGTTCTGC TAGATGTCAA TGAAATAAAC CTAGATCACT CCCTTAGTTG
  R
  CAAAGCAAAA GCCATTCATC CTTACCACAT GCTCAAAGCT GAGGAGCTCA GAGCAGCTGC
  CAAACGAAGC GTAGCTTTCC CTCACCCGGA CATCCCAGCA CGGTAAGATG AACGAATCTG
  TCCAGATAAA TCTAGTATCG CTACCACAGA CCGTTTTCAA ACTCACAACC CAGCTCCAGG
  GTCTCCCTGG CCTCATCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37336982	NES08815452	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27130953					SNP	A	A	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336982	NES08815452	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11500663 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3			Intron
				Noncoding-Transcript-Variant
Rr551793	regulatory region 551793			242 bp distal
Rr551794	regulatory region 551794			710 bp proximal
Tssr22626	transcription start site region 22626			1883 bp upstream
Tssr22627	transcription start site region 22627			1832 bp upstream