rs27130954 SNP Detail

Summary

• ID
  rs27130954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:11499470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTTCTGA AAGCAAATAT
  ACAATCAGGC AGGGAGGAAC TGAGCCCCAG ACAGGGTGTT CCAATCCCTA ACAAAATGGT
  GGAAGAGCAC TCATGGGGGT ACAAAGATGG GACCCCAATG CCAGGAAGGG TAAAATTAGC
  GTTGGGGAGA GATGATTTCC CAATTAAACA TGTAAATTGA ACCAACAGGT AGGAAATAGA
  Y
  TTGAGTGAGA CCCAGAAAAG AGGGAAGACA TTTTCTAAAC TGCACTGAGA CTTTCTTTTC
  TAAATAAAAA ATTAAATAGA GCTTATCGAG TAAAAGTAGG TCATGGACCC AGAATGCTGG
  GCCCCCTGGC TGGGCACCAT GCCTCTGCCT TTCACGACCT TCCTAGCCAG CCCCCCCCCC
  CCCCCGCTCC ATTCTGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37336983	NES08815451	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27130954					SNP	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37336983	NES08815451	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11499470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3			Intron
				Noncoding-Transcript-Variant
Rr551792	regulatory region 551792			1338 bp distal
Rr551793	regulatory region 551793			76 bp proximal
Rr551794	regulatory region 551794			1903 bp proximal
Tssr22625	transcription start site region 22625			1996 bp upstream
Tssr22626	transcription start site region 22626			690 bp upstream
Tssr22627	transcription start site region 22627			639 bp upstream