rs27134094 SNP Detail

Summary

• ID
  rs27134094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:16712528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAATATTCA AAATTGTGTA
  AAGTCCAGAA TACAATCCAG ACCTTTTAGT TTTCTTCCTC CAGAGTATTG TCCCTGTTAA
  CTACATGAGG CCAAGAGAAT TCTCCCAAGT ACACGATAGA TAATTCATTG TTCTCTTCTT
  CGGTCTATGA TGGCATTAAA GAAGGTCAGA ATCTAATGCA TTCTGTAATA ATCCATGTTT
  Y
  CTGTTGTTTG TAATTAAATT ATCCACACCA CTAGCTTTGT AGTAAGCAAT CCTGTCCCTG
  CAGGTATATA AACAAGTTCA TCAACTCCAG CCGGTCCATT TTCCTTGCAT ACAATGACAG
  GTCAATGTTC TCTCAGGTAG AGGATGTTGA GCTTCAGAAA TGAAGAAACC ACAGTCACAG
  AAATGAAACC CAGATACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37348813	NES08799773	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27134094					SNP	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37348813	NES08799773	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16712528 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Plxdc2	plexin domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr552189	regulatory region 552189			1227 bp distal
Rr552190	regulatory region 552190			1308 bp distal