rs27134095 SNP Detail

Summary

• ID
  rs27134095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:16711458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACTTGGT GTGGGTATGA
  GGATCCAATC TCCAGCTTTC TTCAAGAGTG GTATGTGCTT TTAACCCCCA AGCCACCTCT
  CTAGAAACCT CCATTGTTAA GTTTTAAAGC ATACATTTTA ATGACAATTA ATAATGACAC
  AAATTTTCTC ATCGAGTGAG TCCAGTCAAG CCACAGCACT ACCTTAGGAA CAGCTAGGGA
  Y
  ATCATAGGTT AGTAAGAGGT TTGTGAAAAT ACATTTGAGG ATAGATGACT CATAAAAATC
  TTGAGAAATA CCTCTTTTAA AACATTCTGG GGCGAAGAAT GGACCTCAGA GATATAGCAG
  TTGAGACCTT CAGTCAAATT CCAATGTCAA TAAATAAAAT TTAAGATAAA TAAATAAAAA
  GGGAACCTTC TTGAAAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37348814	NES08799834	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27134095					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37348814	NES08799834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16711458 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Plxdc2	plexin domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr552189	regulatory region 552189			157 bp distal
Rr552190	regulatory region 552190			238 bp distal