rs27137445 SNP Detail

Summary

• ID
  rs27137445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:21185689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGAAAC ACGTCCACAG
  TGATAGGATG ATTGACATTA CGGAAGACAG ACCCAAGGTG CAGCTTCTGA CTTTAATGGT
  TTGTTTATAA GTAGAACTCT GACAGTGGAG GAGAAAATTT TCTCTAGAGC AAGCAAATAA
  TTCAACTATT CTTTCAACAC TGCCCCTACA TTTTCGGTGA AAACTTTATT CTCTTCATAG
  Y
  CCTCTTTGAG AAGAGTGGGT TTAGTGTGAT GGCCATGTGG CTTTTTTCTG TCCTGCAACA
  GTTGGCTCAC TTGTTAGCGA TGTAGATGAT CTTGTGCTTC TCAATGACAC TGATGTCGTG
  TTCCAGCTGC TTCATCTCTT TTTCCAGCTT CTGCTTGCGA ATCTTCTTTG GTACAGAATC
  AATGAAGACC GAGAGGGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37357869	NES08798243	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27137445					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37357869	NES08798243	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21185689 () rs orientation: forward

Symbol	Name	Function Class
Enkur	enkurin, TRPC channel interacting protein	mRNA-UTR
Tssr420	transcription start site region 420	1969 bp downstream