rs27137458 SNP Detail

Summary

• ID
  rs27137458
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21184471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTGTCCG GCTCACGTCC
  TTTGGTCTCT GGATAGGATA TAGCCTGCCC ACTCTGAGTC TGCGGCTCTG GATGTGACCT
  CCTTACATCA CACAAGAGCT GTACGACCTG GACTGGGTTT CTATTGTGGT TAGTTACTTA
  CTTTGTGGTC TATTGTTGCA GCTTTTTACC TGGACAAGTG GCATTTTACC ATGTAACATC
  K
  TTTGTATTTG TCATGCACTG CCCTTAGTCT ACATTTGTTC CTAATTAATA AAGAATTCAT
  AAGAAAACCT TAAGATGAAT TTTCAAAAAT AGTGGCATTA AAAACATTCT CCTCTAAGTA
  TCCAAGCTTT TTAATGATGT TTCAAATTTT GCATATGTGG AATTTTTCAA AATGACTGGT
  GTAAAAATCC AGTGGAAATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37357883	NES08798227	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27137458					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37357883	NES08798227	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21184471 () rs orientation: forward

Symbol	Name	Function Class
Enkur	enkurin, TRPC channel interacting protein	1071 bp downstream
Tssr420	transcription start site region 420	751 bp downstream