rs27138323 SNP Detail

Summary

• ID
  rs27138323
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19351079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCATGTCC CCAGAAAGGG
  CACTTTTCCA TGTCTGTCCA GAAAGAAATG GAGCCAATGT GGAGAAGTCA GTGGAGACTG
  CTCCAGGCAT GGGGTAGGGC CAGATCAAGT GATCAGGGGC TGCAGCATCC GGGGATCAAA
  AGTTTTCTTG GAAATTGTGT GACTTACTAA CAGAAGAGAG TACGAGGCCA GAGAGAAGCC
  K
  AGCAGGCTGG GTAAAGAAAA GGTTGTCATT GAGGCAAGAG CCCTGAAAGA CCAATCAAGG
  GTGTGACACC AACATTTAGT TTGTAATTGC ACATCTGGCT TCAAGACTCC TGTCACAGTT
  TTATAGGGAT CACTGGGAAA CACGGACATG AGCATGCACT GAAAACAGAG CTGGGGGAGG
  GTGGGGCACA GGGTGTCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37364843	NES08790111	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27138323					SNP	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364843	NES08790111	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19351079 () rs orientation: forward

Symbol	Name	Function Class
4930447M23Rik	RIKEN cDNA 4930447M23 gene	within coordinates
Cpgi11249	CpG island 11249	1247 bp distal
Rr552454	regulatory region 552454	1406 bp distal
Rr552455	regulatory region 552455	1433 bp distal
Rr552456	regulatory region 552456	648 bp distal
Tssr16410	transcription start site region 16410	1942 bp downstream
Tssr16411	transcription start site region 16411	1410 bp downstream