rs27138330 SNP Detail

Summary

• ID
  rs27138330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19349959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTAGA AGGATGGCTG
  TGAAAAATGA AGCCCTTATG CACAAAGCCA CCGCGTTTCA CTGCGATGTT CACCTGGCCT
  ATGAAGATCT CCGGACACAA AACCAGGCAA CAAAATCAGG ATGCAACAAG ATGGAGGGGC
  AAAGCACAGA AGCGGAGTGG GCCCTGCCGT AGGTGAGGGT TGCCATCCTC TTACACCTGC
  Y
  GCTTCATGCT TGAGCTCAGG TTAGAACACT TGTGAGATGA TTTCTCTATT CTAAATCTGA
  CAGTAATCCC TCGCGGGGGG GGGGGGCGGG GGGGGGAAGA TGCACCTGGC CAGACTGCTA
  GGCTGGCTCA GAAGGTCCCA GAATGACTAT AGGCAGTTTT TGGCTCCTAT GATTGCTGGA
  CATCTCTCCC CATCCCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37364850	NES08790162	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27138330					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364850	NES08790162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19349959 () rs orientation: forward

Symbol	Name	Function Class
4930447M23Rik	RIKEN cDNA 4930447M23 gene	within coordinates
Cpgi11249	CpG island 11249	127 bp distal
Gm74632	predicted gene, 74632	910 bp upstream
Rr552453	regulatory region 552453	921 bp distal
Rr552454	regulatory region 552454	286 bp distal
Rr552455	regulatory region 552455	313 bp distal
Rr552456	regulatory region 552456	within coordinates
Tssr16410	transcription start site region 16410	822 bp downstream
Tssr16411	transcription start site region 16411	290 bp downstream