rs27138336 SNP Detail

Summary

• ID
  rs27138336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19349115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCAACCA CTTACTTCCT
  TTTCCATTAT CTCAAAGTTT TACATAATCA GTAATAAAAT GTGATCGTGA AGCAGCTGGG
  AGTCATTACT ACCAGGCCCA CCTTCTCTTG CCTCATGGCC TGCTGACGTC AAAATGAGGC
  CTTGTTTGCC AGGAGGATGG ATGTTCATGG TCAAGGCAAG TTGTGACTTT AAAGTGACAA
  Y
  AAAGAAAGGG TAAGTTTGCA GGCTGGCAAA CAGGCTGGGA AAGCCCTTGA GAGACTCAGA
  CAGCTCACGC CATACTTCAG ACTTCATAGA CCTGGGAGAC ATCCAGCTTT CTCCCCCAGA
  GAAGCCGCAG CCTGGTCCCT TCCCCTGCCA CACCATCTGG TCCACAGAAA CACCAGACTT
  CCGTGTCTCT CGGCCCTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37364856	NES08790154	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27138336					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364856	NES08790154	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19349115 () rs orientation: forward

Symbol	Name	Function Class
4930447M23Rik	RIKEN cDNA 4930447M23 gene	13 bp upstream
Cpgi11249	CpG island 11249	532 bp proximal
Gm74632	predicted gene, 74632	66 bp upstream
Rr552453	regulatory region 552453	77 bp distal
Rr552454	regulatory region 552454	within coordinates
Rr552455	regulatory region 552455	510 bp proximal
Rr552456	regulatory region 552456	559 bp proximal
Tssr16410	transcription start site region 16410	13 bp upstream
Tssr16411	transcription start site region 16411	516 bp upstream