rs27138337 SNP Detail

Summary

• ID
  rs27138337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19347972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAAAAGT TGGGTGTGCA
  GAGTATCTGC CTGAATGCTA GGGCAAGGAG ACAAGAGTCC CTGGAACTTT CTTGGTCAGT
  TGGTCAAGCC AATCTATATG CACTAGGTTC AGTGAGAGAC CATGTTTCAA ACTACAAGGT
  GAAGAGTGAG GGACAAAGAT ACTGATGTAG GTCTCTGTAC ACACACACAC CACCAGCCCA
  Y
  TCACCTGCTC ACCCATCTGC TCACCCACAT ACATACACAC ACACTTATGG GACACACTTT
  GCTGTCACAC TTTGCTGTCA AGTAGAAAAC ATAGCCTTCA TCTCAAAGAG AAGAGATAGT
  TTATTTTGGA GACAAATATG AGTAACCATG GCCTGGGAAC ACCGATTTAG GTTACTTTAG
  ATTCCATGTT GCAATATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37364857	NES08790197	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27138337					SNP	T	T	T	T	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364857	NES08790197	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19347972 () rs orientation: forward

Symbol	Name	Function Class
4930447M23Rik	RIKEN cDNA 4930447M23 gene	1156 bp upstream
Cpgi11249	CpG island 11249	1675 bp proximal
Gm74632	predicted gene, 74632	within coordinates
Rr552453	regulatory region 552453	938 bp proximal
Rr552454	regulatory region 552454	1067 bp proximal
Rr552455	regulatory region 552455	1653 bp proximal
Rr552456	regulatory region 552456	1702 bp proximal
Tssr16410	transcription start site region 16410	1156 bp upstream
Tssr16411	transcription start site region 16411	1659 bp upstream