rs27140034 SNP Detail

Summary

• ID
  rs27140034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:22702520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGCCCAA GATACTAAGT
  ACTAAAGCCA AGCTGAGACA ATTTGAAAAG ATTAGATACT AGTTCTACAG GGTGGATATT
  TGGAGAATAT TCACAGATTC ACTCCCCATC TCCCCCCAAA AAAGGCTTGT GTAGTATTAT
  ATCTTCTAAT CCAGTCCTGG GAGGCAAATG TTGGCTTACA GAGAGTTTTA GTGATGTGGA
  Y
  ACATATTACT GTTACAGTCT TCAGTACATC ATTTTTCTTC TATAAACTGG ACTCCTTTTA
  AAAAATCACT GGAGTTGTTT TTTAGAAACA ATCAATAAGT AGAACAGTAG TTATAAAGAG
  TCAGAAATTG AATAAAGCTG AGAAAAAACA AAGATGTTAC TACTTAAATA ATAAATTGAA
  GTCATTTAAA AGGTAAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37371757	NES08799155	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27140034					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37371757	NES08799155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:22702520 () rs orientation: forward

Symbol	Name	Function Class
Apbb1ip	amyloid beta precursor protein binding family B member 1 interacting protein	within coordinates
Rr48489	regulatory region 48489	1120 bp distal
Rr48490	regulatory region 48490	720 bp distal
Rr372905	regulatory region 372905	476 bp downstream