rs27140035 SNP Detail

Summary

• ID
  rs27140035
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:22699717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTTACTA GCTGGATGGT
  AGCCCACATC TTCCTGTCTG GGATGGGGGT TAATCAGCAG GACAGTTTGG AAGACATAAA
  TTGTAAGTTC TCATCCTTAG TAACTGCTCC CTAGTATTTT TAGTTCCCAG TAATCTGAAG
  AGTTCTAAGA TAGTAACCAA AGGAGTCTGG TGCTGTTATG TCAAAGGCTG TGACTGCAGG
  S
  TTAAGGCAGG ACTATATGAA CTCTTACATA AATGCCACAG CAACTCTGTG AGATGTATGC
  TATTATTCCT CATTTTGCAG ACAAGGACAC TGAGGCACCA GGAAGTTAGA TGCCTTCTTG
  AGGTGGTCGC TGAGGCCAGA ATTGACTATA TGCTGAGGAC AAATGTCCAG TGGTTTTACT
  GACAGCATTG AACAGTTGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37371758	NES08799209	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27140035					SNP	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37371758	NES08799209	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:22699717 () rs orientation: forward

Symbol	Name	Function Class
Apbb1ip	amyloid beta precursor protein binding family B member 1 interacting protein	within coordinates
Rr48488	regulatory region 48488	317 bp distal
Rr48489	regulatory region 48489	within coordinates
Rr48490	regulatory region 48490	1884 bp proximal
Rr60642	regulatory region 60642	1117 bp distal
Rr372905	regulatory region 372905	1010 bp upstream