rs27140036 SNP Detail

Summary

• ID
  rs27140036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:22698949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCTTCT TCTTCTTCTT
  CTTCTTCTTC TTCTTCTTCT TCTTCTTTTT AATTTTTCTT GGTTGGTTTT GTACTTTTCA
  GACAAGATCT CACTAAAGAG ATCCATACTG ACGTTGAGTT TTTCTTTCTG CTCCCTGAAT
  AGTGGAATTA GACAAACCTG TATACACAGC CTGTTTCTCT GTTTGTTCTT TCACGGCAAT
  R
  GAGACAAGGT ATAACCATAG AGCTCAAACT GGCCTGCAAT TGACTGCCTA AATGCTAAGT
  GACAGTAGCC TATATTATTT ATTAAATGAC AGCTTAGCAA TTGATGACTT GTAAAACTGA
  TTGGCCTGGG GTTGGCTTAG AAAAGTTAAA CCCCTTTGCA GTGCCAGTCA AGTTGCTAAT
  GTTCTCAAAG CAACTAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37371759	NES08799208	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27140036					SNP	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37371759	NES08799208	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:22698949 () rs orientation: forward

Symbol	Name	Function Class
Apbb1ip	amyloid beta precursor protein binding family B member 1 interacting protein	within coordinates
Rr48488	regulatory region 48488	52 bp proximal
Rr48489	regulatory region 48489	652 bp proximal
Rr60642	regulatory region 60642	349 bp distal
Rr372905	regulatory region 372905	1778 bp upstream
Rr396803	regulatory region 396803	1234 bp downstream