rs27140037 SNP Detail

Summary

• ID
  rs27140037
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:22698909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTCTTC TTCTTCTTCT
  TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT
  TCTTCTTTTT AATTTTTCTT GGTTGGTTTT GTACTTTTCA GACAAGATCT CACTAAAGAG
  ATCCATACTG ACGTTGAGTT TTTCTTTCTG CTCCCTGAAT AGTGGAATTA GACAAACCTG
  Y
  ATACACAGCC TGTTTCTCTG TTTGTTCTTT CACGGCAATA GAGACAAGGT ATAACCATAG
  AGCTCAAACT GGCCTGCAAT TGACTGCCTA AATGCTAAGT GACAGTAGCC TATATTATTT
  ATTAAATGAC AGCTTAGCAA TTGATGACTT GTAAAACTGA TTGGCCTGGG GTTGGCTTAG
  AAAAGTTAAA CCCCTTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ
ss37371760	NES08799207	PERLEGEN	MM_PANEL2	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ
rs27140037					SNP	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37371760	NES08799207	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:22698909 () rs orientation: forward

Symbol	Name	Function Class
Apbb1ip	amyloid beta precursor protein binding family B member 1 interacting protein	within coordinates
Rr48488	regulatory region 48488	92 bp proximal
Rr48489	regulatory region 48489	692 bp proximal
Rr60642	regulatory region 60642	309 bp distal
Rr372905	regulatory region 372905	1818 bp upstream
Rr396803	regulatory region 396803	1194 bp downstream