rs27143750 SNP Detail

Summary

• ID
  rs27143750
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:41272897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAGATTT AAAACACTGA
  AGCAATGATA ACATAATTCA GTTCACATTG TTAATTTCCT CCGGCTACTG TTTGGAAAAA
  TGGATAGTTT GAAGCTTGAG TCAGACTCCA GATAACACCA GTTGCTGGAG TCTGGGCCTA
  AATGTCAACC ACAGCTTCTG CTTCTGGAAA CATTTGATAG GGTGGTGGAG ACCTTGATAA
  D
  TAGGTGATGT GTGCAGTTGC CAGGCCACAT CATAAACACC CATAGCAGGA GGAAGTGCTG
  TCAGGACAGA TGAAAGCTTC CCTAGGCTTA GAGGGATCAC ATGAGCCATT CTTATGACAG
  AAAACAAAAC AGGAATTCTG AGTTCTATTT TAAGAGTTCC CAGAAGAAAA ACTCAGTGGA
  AGAAACGATT CATTCTTCAG                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37381874	NES08738376	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T		G	T	T		T
ss320245454	CHEV_2_41238405	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27143750					SNP	T	T	T	T	T	T	G	T	T	T	T	G	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37381874	NES08738376	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:41272897 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr134	DNA Segment, Chr 2, Derry C. Roopenian 134	1141 bp proximal
Lrp1b	low density lipoprotein-related protein 1B	within coordinates
Rr556252	regulatory region 556252	within coordinates