rs27143753 SNP Detail

Summary

• ID
  rs27143753
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:41272679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAGGAT AGGTAAAGCC
  ACAAAAATAT TAAGGAAATT AAGAAGATAC TAAGCTAACA GAATAGGCAC AGGAAAGGTG
  TAAAAAGGAG ATACAGTATT AATTTTTATA GCACAAAGAA ATAAGAGTTG AAGAGTGAAG
  TTAGATCTAA ATGATGAGAG GAAGAATCTT TTGGTATCTA TTAATAACTG TGATAAGATA
  R
  ATTCAATTGT ATCAGTAATA GAGATTTAAA ACACTGAAGC AATGATAACA TAATTCAGTT
  CACATTGTTA ATTTCCTCCG GCTACTGTTT GGAAAAATGG ATAGTTTGAA GCTTGAGTCA
  GACTCCAGAT AACACCAGTT GCTGGAGTCT GGGCCTAAAT GTCAACCACA GCTTCTGCTT
  CTGGAAACAT TTGATAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37381877	NES08738373	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27143753					SNP	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37381877	NES08738373	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:41272679 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr134	DNA Segment, Chr 2, Derry C. Roopenian 134	1359 bp proximal
Lrp1b	low density lipoprotein-related protein 1B	within coordinates
Rr556252	regulatory region 556252	126 bp proximal