rs27143758 SNP Detail

Summary

• ID
  rs27143758
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:41272252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATT TCAAGCATCC AAGTAGCAAG
  S
  AGGAATTATT TAGAAAGTCA AATAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37381882	NES08738368	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	G	C		C	C	C	C		C	C	C		G
ss45211550	mCV23641501	ABI	CRAMUS_MOUSE	f	SNP		C	C				G		C
ss146446590	ENSMUSSNP4173007	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss320245441	CHEV_2_41237760	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27143758					SNP	C	C	C	C	G	C	G	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37381882	NES08738368	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:41272252 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr134	DNA Segment, Chr 2, Derry C. Roopenian 134	1786 bp proximal
Lrp1b	low density lipoprotein-related protein 1B	within coordinates
Rr556252	regulatory region 556252	553 bp proximal