rs27144354 SNP Detail

Summary

• ID
  rs27144354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18762886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATAGCCAG GGCTATACAG
  AGAAGACCTG TCTCTGAAAA AAAAAAATCA ATAAAAGTCA CAATTCCCTG TGAATTGATC
  AGCTTTTGTT TTGAGCGTGA GGAAGGCACT CATGGTGACT CAATCCTTGC ATCTTTTTAA
  TTTTCTTCCA TTTTTAAAAT TACCTCTTTG CAAAGATTTT AGTGTTAAAT TCTGTTTCTC
  Y
  GGTTTAAACC ATCAATTCCA ATTAATTCCC TGGAGGCCTT TGGGGAAAAA AAAAAACACT
  AGGAGTTTCT GTAGGGAGAG GGGAAAGAAG AGGGGCTTGG GTCATCTCTG TGCTTCGTGT
  CTTACTGATG GTTAAATACA GTGGTTTGTT CTGTTTTCTG CCACTTGTGG GTTATTTAAT
  TAAATTCATG ACCGAGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37366885	NES08791057	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27144354					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37366885	NES08791057	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18762886 () rs orientation: forward

Symbol	Name	Function Class
Gm3363	predicted gene 3363	within coordinates
Gm13333	predicted gene 13333	909 bp upstream
Rr552354	regulatory region 552354	1935 bp distal
Rr552355	regulatory region 552355	1612 bp distal
Rr552356	regulatory region 552356	1715 bp distal