rs27144355 SNP Detail

Summary

• ID
  rs27144355
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18762879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCCAGGA TAGCCAGGGC
  TATACAGAGA AGACCTGTCT CTGAAAAAAA AAAATCAATA AAAGTCACAA TTCCCTGTGA
  ATTGATCAGC TTTTGTTTTG AGCGTGAGGA AGGCACTCAT GGTGACTCAA TCCTTGCATC
  TTTTTAATTT TCTTCCATTT TTAAAATTAC CTCTTTGCAA AGATTTTAGT GTTAAATTCT
  S
  TTTCTCTGGT TTAAACCATC AATTCCAATT AATTCCCTGG AGGCCTTTGG GGAAAAAAAA
  AAACACTAGG AGTTTCTGTA GGGAGAGGGG AAAGAAGAGG GGCTTGGGTC ATCTCTGTGC
  TTCGTGTCTT ACTGATGGTT AAATACAGTG GTTTGTTCTG TTTTCTGCCA CTTGTGGGTT
  ATTTAATTAA ATTCATGACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37366886	NES08791056	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27144355					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37366886	NES08791056	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18762879 () rs orientation: forward

Symbol	Name	Function Class
Gm3363	predicted gene 3363	within coordinates
Gm13333	predicted gene 13333	916 bp upstream
Rr552354	regulatory region 552354	1928 bp distal
Rr552355	regulatory region 552355	1605 bp distal
Rr552356	regulatory region 552356	1708 bp distal