rs27144356 SNP Detail

Summary

• ID
  rs27144356
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18762135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTTGTTC AAAATTTTGA
  AATGGTACAA CTGTCACAGT AGTGTGATAA ATGGTACTAA CAGCTCCAAG GGTCATACTA
  TGTAAGGATG GAAAACTGAC CAGTCAGGTG CGATCTGTAG AGATATACCA GGACATACCA
  TGGTGATAAA ATATATTCAA AAGGGTAACA TTACCAAGGA TCTCAGTGGA GACTGTCTCT
  R
  CACGTAGGGC TCACTGGAAG AGAGGTAGTT ATAGAATGGG GGCTCCTTGA CAGAAATAAG
  GATAGGATCC CAAAATAAGA GAAGTCAGAT AATCCCAGAA GCAAAGTGTA TGTAATTATT
  TCAACAGGAT GAGGTTAATG TATATCCAGT GGTCCTATCC TGACATTTAT GAAGACAGTC
  AATAGAACTT AATGTTCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37366887	NES08791095	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27144356					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37366887	NES08791095	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18762135 () rs orientation: forward

Symbol	Name	Function Class
Gm3363	predicted gene 3363	within coordinates
Gm13333	predicted gene 13333	1660 bp upstream
Rr552354	regulatory region 552354	1184 bp distal
Rr552355	regulatory region 552355	861 bp distal
Rr552356	regulatory region 552356	964 bp distal