rs27144364 SNP Detail

Summary

• ID
  rs27144364
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18760326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGAAAAAG CAGGGAAAAA GTGTCCATGT TATTCAAGAA
  TTTTAAAATA AAATTCCCAG AGGCACAGCA GTTCCTTCGT TTTATAGAGC ACAGTTTTCA
  Y
  TTTTCTCTAA GTGGGCTTAA GGGAAATCCT CAGTGATTAA TCTAGGAATC AGCATAAAAA
  ATATTTATTT CTGAATTTTT TTATTCACAA TTGGCATAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37366895	NES08791140	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	C		T	T	C	C	T	T	C	T	T
ss45214871	mCV23542707	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss146310334	ENSMUSSNP5900868	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27144364					SNP	C	T	T	C	C	C	C	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37366895	NES08791140	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18760326 () rs orientation: forward

Symbol	Name	Function Class
Gm3363	predicted gene 3363	within coordinates
Rr552354	regulatory region 552354	604 bp proximal
Rr552355	regulatory region 552355	714 bp proximal
Rr552356	regulatory region 552356	824 bp proximal