rs27144371 SNP Detail

Summary

• ID
  rs27144371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18759654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCTCAG TCCTCTTTCT
  TAGGTGTGTG GGGTTTAAGC CCAATGATTT ATGATAGAAC GAAACTGCTT TCCTGCCGTC
  GTGGAGTTTT CTGGCGTGCA CACTTTCCCA GAGGGAGCAA ACCATCCATC AAGCACAGAG
  CACAAAGCAG TCCTGTTTAA CTTAGATGTG AAAACAAACG ACAGCCCCAC AGTCACAGGA
  Y
  ACGCTTCTCA AACCGGTTCC TCCAAAAACA AAACACAACA CAACACAACA ACAACAACAA
  CAAGCCAACC AATGAATCAA AGATTTGCTA GAAATTAAGC TCTTAACATA AACCTTGTCA
  TTAAATCCCA AGGTGAGGCT ATCTCATTTA GAAACTGACC TTGAAGAGAT GAATTTTCTG
  TAACAGTCCC TTTAAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37366902	NES08791133	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	C	T
ss146310316	ENSMUSSNP2055681	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27144371					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37366902	NES08791133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18759654 () rs orientation: forward

Symbol	Name	Function Class
Gm3363	predicted gene 3363	within coordinates
Rr552354	regulatory region 552354	1276 bp proximal
Rr552355	regulatory region 552355	1386 bp proximal
Rr552356	regulatory region 552356	1496 bp proximal