rs27144549 SNP Detail

Summary

• ID
  rs27144549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:38818416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATGTAT ATGAGTATAC
  TTATACACTG TAGCTGTCTT CAGACACACC AGAAGAGGGC ATCAGATCCC ATTACAGATA
  GTTGTGAGCC ACTATGCAGT TGCTGGGAAT TGAACTCAGG ACCTCAGGAA GAGCAGTCAG
  TGCTCTTAAC CACTGAGCCA TCTTTCCAGC CCCAAGAAAT GATCTTGAAG TGGTTATGTC
  Y
  TTGACAAGGG TTCTGAGCTT TCCCAAGGCC AGGGAGCAGT GTTCTGCAGC AGGCCCCTGG
  AATATAAGAT GAGTCCTTTG TGTCGTGGGG AAGAAAGCCT TCTTCAGCTC TGGATTCTGA
  AATGTGCCAG GATCGCATAG CCTTCCCAGA GCCAGAGTTC CCCTCAATCA CAGGCTCCTG
  GTGCAGAAGA GTCCTCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37385780	NES08745517	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27144549					SNP	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37385780	NES08745517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:38818416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11616	CpG island 11616	1844 bp distal
Gm75760	predicted gene, 75760	within coordinates
Nr6a1	nuclear receptor subfamily 6, group A, member 1	1952 bp upstream
Rr43350	regulatory region 43350	16 bp distal
Rr43351	regulatory region 43351	1585 bp proximal
Rr56789	regulatory region 56789	815 bp distal
Rr396935	regulatory region 396935	1793 bp downstream
Tssr23834	transcription start site region 23834	1950 bp upstream