rs27144550 SNP Detail

Summary

• ID
  rs27144550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:38817169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGATTAA AGTTTCTCTT
  CCTCCTCTTT CATTCCCCGC ACCCTGCCCA TAGAACAGAT GGACAAACTA AGATCACTTC
  CACTGATGCC ACCAAAGAAA ACTTGAGACC CCTGACTCCT TGTGTCTTAA AGAGTTCTGT
  TTTAAGAATG TCCCTTTCCC GGAGTGTTCC CCTTCCCACT CCTGTTCAGT ATACCTGTCT
  Y
  AAAAATGAGA GGTGTAATAA GAATCGGATC CAGTGATAAG AGACCAACTC TCACATACAC
  GCTATCGCCT CAGTTTACAG AAGTTCCCAC CAAATAAAAT CCTGGATTTT CTCCCCTTCC
  TCCTCCAGGG CCCACCTCCC GCTGCCACCA GGTGGCGCGC GGCCATGGGG CTCTCAGGAT
  TAGGGGTGGT GGTGATTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37385781	NES08745570	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27144550					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37385781	NES08745570	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:38817169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11616	CpG island 11616	597 bp distal
Gm75760	predicted gene, 75760	1015 bp downstream
Nr6a1	nuclear receptor subfamily 6, group A, member 1	705 bp upstream
Rr43350	regulatory region 43350	1032 bp proximal
Rr56789	regulatory region 56789	within coordinates
Rr396935	regulatory region 396935	546 bp downstream
Tssr17567	transcription start site region 17567	1660 bp downstream
Tssr23832	transcription start site region 23832	803 bp upstream
Tssr23833	transcription start site region 23833	771 bp upstream
Tssr23834	transcription start site region 23834	703 bp upstream