rs27144551 SNP Detail

Summary

• ID
  rs27144551
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:38816564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGGAATTC TGGGAAATGT AGTCCTCCCA ACGAGGCTGC
  CCACACGGGA CTCTACCAAA TAAAGGGGTG ATGGAAAAAA AACAGGAAGA CCTAAGTAGG
  S
  AGAACCCAAA CCTATCACTA TTACAAACTC TAATAAAATT TCTAATATAT TAATATAATA
  AACGGCTATG TCAGAGTTTT CTCTCTATTG TAACTTATTC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37385782	NES08745569	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27144551					SNP	G	C	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37385782	NES08745569	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:38816564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11616	CpG island 11616	within coordinates
Gm75760	predicted gene, 75760	1620 bp downstream
Nr6a1	nuclear receptor subfamily 6, group A, member 1	100 bp upstream
Rr43350	regulatory region 43350	1637 bp proximal
Rr56789	regulatory region 56789	within coordinates
Rr396935	regulatory region 396935	within coordinates
Tssr17567	transcription start site region 17567	1055 bp downstream
Tssr23832	transcription start site region 23832	198 bp upstream
Tssr23833	transcription start site region 23833	166 bp upstream
Tssr23834	transcription start site region 23834	98 bp upstream