rs27144713 SNP Detail

Summary

• ID
  rs27144713
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:38715337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGAGTGT TACTGGGCAG
  CCTAGGAGTT AATCTTGCCT AGCGTGGCTC TGAGCTCTCA TGCCGAGCAG ACGTTATTCA
  CATGACGATT CGAAAAGTCC ATTCATGTAT CTCACTACCT GGATTTGAAT AGAAACCAGA
  CAGCAATTCT TTAGTTCCAG CCACATTCGC CCCACTGGAC AATAGTGATT TGTTAGCACA
  S
  AGTCGCAGGC TGGGGAACAC AAAGCTCAGA GCTGCAGAAA GATGCAGAAT TCAGAGAACA
  GGAAGTTACA GGCTCCACAC ACTCCTGGCA GCTCTGAGAT TTGAAGAGAA TAAAAAAAGG
  AAAGAAAGAG AAAAGGGCAG CACGGAGATC CGAGATGCCA TGGTTAAGGG CTACTCTAGC
  ATTTTAACCA CCTCCAGTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37385947	NES08746002	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27144713					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37385947	NES08746002	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:38715337 () rs orientation: forward

Symbol	Name	Function Class
Nr6a1	nuclear receptor subfamily 6, group A, member 1	within coordinates
Nr6a1os	nuclear receptor subfamily 6, group A, member 1, opposite strand	within coordinates
Rr825	regulatory region 825	621 bp distal
Rr367190	regulatory region 367190	880 bp downstream
Rr556158	regulatory region 556158	1770 bp distal
Rr556159	regulatory region 556159	666 bp distal
Rr556160	regulatory region 556160	within coordinates
Rr556161	regulatory region 556161	820 bp proximal
Tssr17565	transcription start site region 17565	1975 bp downstream