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rs27144715 SNP Detail
Summary
  • ID
    rs27144715
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:38715186 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAAAAAAAAA AACACACACC
    TAATCTGGCA TGTTTCCCAA AGTTCAGGAA CACTTAAAAA AACCAGTTAA ATAATTTAAC
    ACCTAGCCCA ACTTAGGAAA TGGAGAATTA AGCATGTGTC AGACGCTTCT TTCTAATGGT
    TTAGCTCCTA CCGCAGAGTG TTACTGGGCA GCCTAGGAGT TAATCTTGCC TAGCGTGGCT
    Y
    TGAGCTCTCA TGCCGAGCAG ACGTTATTCA CATGACGATT CGAAAAGTCC ATTCATGTAT
    CTCACTACCT GGATTTGAAT AGAAACCAGA CAGCAATTCT TTAGTTCCAG CCACATTCGC
    CCCACTGGAC AATAGTGATT TGTTAGCACA CAGTCGCAGG CTGGGGAACA CAAAGCTCAG
    AGCTGCAGAA AGATGCAGAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37385949 NES08746000 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27144715 SNP C C C C C C C C C C C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37385949 NES08746000 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:38715186 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Nr6a1 nuclear receptor subfamily 6, group A, member 1 within coordinates
Nr6a1os nuclear receptor subfamily 6, group A, member 1, opposite strand within coordinates
Rr825 regulatory region 825 470 bp distal
Rr43339 regulatory region 43339 1615 bp proximal
Rr56788 regulatory region 56788 within coordinates
Rr367190 regulatory region 367190 729 bp downstream
Tssr17564 transcription start site region 17564 1902 bp downstream
Tssr17565 transcription start site region 17565 1824 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory