rs27144716 SNP Detail

Summary

• ID
  rs27144716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:38714747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTAAAC GCAATCCTAT
  CGAGATTTTC TTTTTCAGGT ATATTGAAGA TACTTAAAAT AACTGTTTAT AGATAAATGA
  GAATTGTAAA TTATAGTACC ATTTTAAACC TATAATTAAA AAAGATTAAC CAATTCTGGT
  ATAACTTAGG TGGGTTCCTA ATTTGAAGGC AACTTGTTTT CTTTGATTTT TATGTTACAT
  R
  TGAAGCTCGA TTTTCTTTGT ATAGATGTGG GCTTTGGGGA AAATATTTGA AGTAATAAGA
  AAGTACTTTT TAAAAAGGGC GGGGATGGTT TCCCTTTGTG GGGTGGAAAG CAGTTTAAAG
  GACTAGTTCC TTGAGAAAAG CAGCTGTCTC TTACTTTTGT TTATGTGCAA TCAAGTAACT
  TTATAATATA AAAAATGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37385951	NES08745998	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27144716					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37385951	NES08745998	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:38714747 () rs orientation: forward

Symbol	Name	Function Class
Nr6a1	nuclear receptor subfamily 6, group A, member 1	within coordinates
Nr6a1os	nuclear receptor subfamily 6, group A, member 1, opposite strand	within coordinates
Rr825	regulatory region 825	31 bp distal
Rr56788	regulatory region 56788	within coordinates
Rr367190	regulatory region 367190	290 bp downstream
Tssr17564	transcription start site region 17564	1463 bp downstream
Tssr17565	transcription start site region 17565	1385 bp downstream