rs27144718 SNP Detail

Summary

• ID
  rs27144718
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:38712929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATCAAACT GCAAAATCAG GTCCATGGTC TGGAGAGGAA
  GCTGGCTAAA TCAAACAATT AGTTTAGTTA CAGCACAATT TATCAACAAT AGGCTGGCTT
  W
  GAACTGTGGC ATCAGCTGCA TTATTGTATT TTAGAAAGAC TAGTTCCCCC GACATGTATA
  TAAGGTGTAA GCAACTACTC CGTGGGTCAT GCCATCAAAC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	WSB/EiJ
ss37385953	NES08744563	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	WSB/EiJ
rs27144718					SNP	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37385953	NES08744563	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:38712929 () rs orientation: forward

Symbol	Name	Function Class
Nr6a1	nuclear receptor subfamily 6, group A, member 1	within coordinates
Nr6a1os	nuclear receptor subfamily 6, group A, member 1, opposite strand	330 bp upstream
Rr825	regulatory region 825	574 bp proximal
Rr43338	regulatory region 43338	729 bp distal
Rr56788	regulatory region 56788	within coordinates
Rr367190	regulatory region 367190	1375 bp upstream
Tssr17564	transcription start site region 17564	312 bp upstream
Tssr17565	transcription start site region 17565	420 bp upstream