rs27144719 SNP Detail

Summary

• ID
  rs27144719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:38711692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGCCAC CTGTAATTCC
  TTTGGCTTCT GTGTACATCT GCATTGATGT TCATATAGCT GCATATACGT GTGCATGTAC
  ACAAACATAT ACATAATCTG AAAGTAATTA AAAATTTTTT AAACGAATGG AACAGATGCC
  AGTGACCTAT TGGACCATAA GTTGTATGCT ATTTTCTGTA TTTGTTTTCC AAAATTTGGA
  R
  AAAGTAATGA ACACTATATG TTGAGTTATG ACTCAAAATA GCTAAGCACA TTATTATTTA
  ATACTGGAGA AATTCTTCAT AAATCAATTT TATCTTCCCT CCAAAGTAGT TTGCCTTTAA
  CAAACATTAT ATACCTGGAA GGCAACCCAC ATTATTTGTC ATGGGCGCGC GCGTGTACAC
  ACACACACAC ACACACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	FVB/NJ	NZW/LacJ	PWD/PhJ
ss37385954	NES08744567	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	FVB/NJ	NZW/LacJ	PWD/PhJ
rs27144719					SNP	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37385954	NES08744567	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:38711692 () rs orientation: forward

Symbol	Name	Function Class
Nr6a1	nuclear receptor subfamily 6, group A, member 1	within coordinates
Nr6a1os	nuclear receptor subfamily 6, group A, member 1, opposite strand	1567 bp upstream
Rr825	regulatory region 825	1811 bp proximal
Rr43338	regulatory region 43338	309 bp proximal
Rr56788	regulatory region 56788	708 bp proximal
Tssr17564	transcription start site region 17564	1549 bp upstream
Tssr17565	transcription start site region 17565	1657 bp upstream